Current Research Topics
- Mechanism of Persistent Infection for the Human T-cell Leukemia Virus
- Probe-based target enrichment improves ChIP-seq analysis of HIV-1 and HTLV-1 provirus
Analysis of the mechanism of the persistent and latent retroviral infection
There are two retroviruses known to cause human diseases. We are investigating these two retroviruses, HIV and HTLV, in order to elucidate the mechanism of persistent and latent retroviral infection.
1. HIV (Human Immunodeficiency Virus）infection
There are approximately 34 million people infected with HIV-1 in the world. More than 20,000 people have been positive for HIV-1 in Japan. HIV-1 infection is still spreading in some countries, so HIV infection is a viral infection that requires urgent regulatory and preventive action.
Because of remarkable advance of anti-retroviral therapy, HIV infection has been changed from incurable to controllable viral infection. Yet anti-retroviral therapy can't completely eradicate HIV from infected individuals. Therefore, the patients must continue to take anti-retroviral drugs for a long period. The latent and persistent HIV infection is a cause of such clinical problems.
We are aiming to generate a novel molecular target for the eradication of the latently HIV-1 infected cells via analyzing the mechanism of HIV-1 latency.
2. HTLV (Human T-cell Leukemia Virus）infection
HTLV-1 is a causative agent of adult T-cell leukemia (ATL). There are approximately 20 million people infected with HTLV-1 in the world. Japan is an endemic area and there are about one million people infected with HTLV-1. In particular, there are lots of HTLV-1 carriers in Kyushu and Okinawa area including Kumamoto prefecture. In contrast to HIV-1, HTLV-1 rarely produces the viral particle but maintains latent infection, thereby achieving persistent infection in the infected individuals.
Most of HTLV-1 carriers are asymptomatic and don't cause any disease status, but some carriers develop ATL and/or chronic inflammatory diseases. Our laboratory is trying to develop novel therapeutic strategy or early diagnostic procedure for ATL and HTLV-1 related human diseases.
3. Interaction between retroviral research and human genomic research
Human genomic DNA contains approximately 3.1 billion base pairs as genetic information for our fundamental life activity.
Human genome project had been completed in 2003 and revealed whole DNA sequencing of human genome. However, our knowledge for the mechanism of human diseases still remains elusive. Post genomic research, such as regulatory mechanism of transcription or the role of non-coding transcript would be one of current critical and exciting research area.
HIV-1 and HTLV-1 genome contains just about 9,000 base pairs, but integration of such tiny retroviral genome sometimes causes fatal disease in the infected host. Understanding of how these tiny viruses utilize and disturb huge human genome in order to achieve persistent infection in the host would be a quite unique scientific approach to investigate the regulatory mechanism of human genome.
To address these points, we are going to analyze retroviral integration within human genome by using next generation sequencing techniques, epigenetic regulation of transcription of the integrated provirus, and the effect of three-dimensional spatial localization of the provirus in the nucleus on the regulation of the transcriptional regulation.
We are going to make progress in these researches via collaborating with Prof. CRM Bangham and his colleagues at Imperial College London, UK. Also, all specialized machines required for performing these researches are available as common use machines in the Center for AIDS Research and Institute of Molecular Embryology and Genetics in Kumamoto University.